species:   Rhsol
pid:       PID0507
parent:    Rhi-milR-169
paralog:   
locus:     KB317710.1:103990-104100
matures:   ['UUGGGGCAAAUAUUAGGAACUGUUG', 'AUGGUCCAAAAGUAUUGGCUCCCUCAAGUG']
srr:       SRR1994877
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram KB317710.1:103990-104100

1 out of bounds
256 alignments
145 proper strand
5 stranded perfect matches

                 ************************             *****************************                            
CACAUAGGUAACUCCUGCCUUGGGGCAAAUAUUAGGAACUGUUGUUAUCUACUAUGGUCCAAAAGUAUUGGCUCCCUCAAGUGUUUCAGUUGCCACCUAUACCUCCUGUAC
......(((((((...(((((((((..((((((.(((.((((.((.....)).)))))))...)))))).....))))))).))...))))))).................
-------------------UUGGGGCAAAUAUUAGGAACUGUUG------------------------------------------------------------------- l=25 a=0 c
-----------------------------------------------------AUGGUCCAAAAGUAUUGGCUCCCUCAAGUG---------------------------- l=30 a=0 c*
-------------------UUGGGGCAAAUAUUAGGAACUG---------------------------------------------------------------------- l=22 a=2 ma
--------------------------------------------------------GUCCAAAAGUAUUGGCUCCCUCAAGUG---------------------------- l=27 a=0 ma*

------------------------------------------------------------------------------------UUCAGUUGCCACaUAUACCUCC----- l=22 a=2 
---------------------GGGGCAAAUAUUAGGAuCUGU--------------------------------------------------------------------- l=21 a=1 
--------------------UGGGGCAAAUAUUAGGAuCUGU--------------------------------------------------------------------- l=22 a=3 
--------------------UGGGGCAAAUAUUAGGAuCUGUU-------------------------------------------------------------------- l=23 a=7 
--------------------UGGGGCAAAUAUUAGGAuCUGUUG------------------------------------------------------------------- l=24 a=42 
--------------------UGGGGCAAAUAUUAGGAACUGUUu------------------------------------------------------------------- l=24 a=2 
--------------------UGGGGCAAAUAUUAGGAuCUGUUGU------------------------------------------------------------------ l=25 a=1 
--------------------UGGGGCAAAUAUUAGGAuCUGUUGUU----------------------------------------------------------------- l=26 a=1 
-------------------UUGGGGCAAAUAUUAGGAuCU----------------------------------------------------------------------- l=21 a=3 
-------------------UUGGGGCAAAUAUUAGGAuCUG---------------------------------------------------------------------- l=22 a=8 
-------------------UUGGGGCAAAUAUUAGGAACUG---------------------------------------------------------------------- l=22 a=2 (ma)
-------------------UUGGGGCAAAUAUUAGGAuCUGU--------------------------------------------------------------------- l=23 a=25 
-------------------UUGGGGCAAAUAUUAGGAAuUGU--------------------------------------------------------------------- l=23 a=1 
-------------------UUGGGGCAAAUAUUAGGAACUGU--------------------------------------------------------------------- l=23 a=1 
-------------------UUGGGGCAAAUAUUAGGAuCUGUU-------------------------------------------------------------------- l=24 a=11 
-------------------UUGGGGCAAAUAUUAGGAACUGUU-------------------------------------------------------------------- l=24 a=1 
-------------------UUGGGGCAAAUAUUAGGAuCUGUUG------------------------------------------------------------------- l=25 a=18 
------------------CUUGGGGCAAAUAUUAGGAuCUG---------------------------------------------------------------------- l=23 a=7 
------------------CUUGGGGCAAAUAUUAGGAuCUGU--------------------------------------------------------------------- l=24 a=8 
------------------CUUGGGGCAAAUAUUAGGAACUGU--------------------------------------------------------------------- l=24 a=1 

mb-01011
ax-1001011
ku-01
ss-111110101000
fn-101
